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6 d ago
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Does anyone try to run SPLASH Lipidomix Quantitative Mass Spec Internal standard by HILIC method on Agilent LC-QTOF? I do not see peaks on the chromatogram, neither positive nor negative ionization mode, and I am wondering what is the source of the problem - smth wrong with detector settings, LC method issues, column issues (we use Luna 3µm), standard mixture issues etc.

Mass Spectrometry (MS)
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Avatar youhana Hosny 6 d ago

Is this problem only with this standard ?
have you tried any old method to make sure that the problem is not with the instrument ?

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8 d ago

In Linearity solutions area variation observed but standard area remains same.

Mass Spectrometry (MS)
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Avatar youhana Hosny 8 d ago

what is your matrix ?

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Prashant Pawar 8 d ago
If you're observing area variation in linearity solutions while the standard area remains consistent, this points to some potential root causes specific to the linearity sample preparation or handling. Here's a breakdown of what could be causing this issue and how to troubleshoot it: Possible Reasons & Solutions for Area Variation in Linearity Solutions1. Pipetting/Volumetric ErrorIssue: Inaccurate pipetting during dilution steps leads to inconsistent concentration.Solution: Use calibrated pipettes and class A volumetric flasks. Repeat dilution steps with special attention to technique.2. Improper Mixing or Incomplete DissolutionIssue: Linear samples may not be fully dissolved or homogenized, leading to inconsistent injection results.Solution: Ensure thorough mixing at each dilution level; use sonication or vortexing as required.3. Weighing ErrorsIssue: If linearity solutions are prepared by weight, small errors in weighing the API or excipients can cause variation.Solution: Verify the balance calibration. Use higher sample weights to reduce relative error.4. Solution StabilityIssue: If linearity solutions are not freshly prepared, degradation or evaporation might occur.Solution: Prepare fresh solutions and inject immediately. Validate the short-term stability of solutions.5. Glassware Cross-contaminationIssue: Residue in glassware between dilutions can introduce variation.Solution: Rinse thoroughly and ensure glassware is clean before use.6. Injection Volume InconsistencyIssue: Autosampler may not be consistent for all injections.Solution: Check injection reproducibility by multiple injections of the same sample. Recalibrate the injector if needed.7. Matrix or Mobile Phase MismatchIssue: If linearity solutions are not matrix-matched with the standard, it may impact area.Solution: Ensure the same diluent and mobile phase are used for both standard and sample prep.
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Alejandro Martínez 8 d ago
Just to complete and additional to Mr Pawar comment, if you are using a Waters LC make sure that the rinse solution has the propper organic:aquous ratio. This is more likely to be a sample preparation issue (specifically extracción/dissolution conditions/diluent election), or a filtering issue (i.e. non filtering the standard solutions vs filtering the linearity solutions)
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21 d ago
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I was analyzing plasma samples using LC-MS/MS for a drug quantification study. The standard curve looked great in pure solvent, but when I injected extracted plasma samples, the signal dropped significantly.

After some digging, I realized the problem was ion suppression caused by co-eluting matrix components. These were interfering with ionization efficiency in the ESI source.

Switching to solid-phase extraction (SPE) instead of protein precipitation helped clean up the matrix, and the response came back to normal. Ever since, I always test for matrix effects early in method development.

Mass Spectrometry (MS) case_study mass_spectro
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